Publications

ResearchGate | ORCID | Google Scholar

* indicates mentored undergraduate student

In review

  1. Lewis, A. S. L., D. Mercado-Bettin, and C. C. Carey. Ecological memory contributes to a spatial mismatch in water quality trends between the surface and bottom waters of 382 temperate lakes. In revision at Ecology Letters. [preprint]

  2. Lewis, A. S. L., D. C. Richardson, D. W. Howard, C. C. Carey, Y. Amitai, S. Bansal, E. de Eyto, H-P Grossart, K. K. Hoffman, R. Hovel, L. Knoll, B. M. Kraemer, I. Oleksy, M. Schmid, R. Schwefel, D. Straile, X. Sun, G. A. Weyhenmeyer, W. M. Woelmer, S. Wollrab, P. Znachor. How should we analyze seasons and seasonality in lakes? In revision at Limnology and Oceanography Letters.

  3. Lewis, A. S. L., J. R. Holmquist, A. N. Al-Haj, Z. N. Read, R. L. Rich, J. P. Megonigal, and G. L. Noyce. Warming decreases the predictability of coastal wetland methane emissions. In review at Ecosphere.

  4. Hounshell, A. G., A. S. L. Lewis, D. W Howard, H. L. Wander, M. E. Lofton, P. C. Hanson, and C. C. Carey. Dissolved organic carbon dynamics are driven by water temperature, primary production, and anoxia over five years of whole-ecosystem experiments in a eutrophic reservoir. In review at Aquatic Science. [preprint]

  5. Colton, M., T. Fanara, S. Babin, A. S. L. Lewis, M. Dietze, C. Brown, M. Cotnoir, A. Caldas, K. Boyd. Ecological Forecasting for Readiness, Resilience, and Response. In revision at Bulletin of the American Meteorological Society.

  6. Rabaey, J. S., A. S. L. Lewis, K. Attermeyer, P. Aurich, S. Bansal, M. Bartosiewicz, B. L. Bertolet, I. Bussmann, S. B. Cadieux, E. Calamita, C. Capelli, C. C. Carey, C. Cillero, F. Clayer, S. L. D’Ambrosio, T. A. Davidson, B. R. Deemer, B. A. Denfeld, W. Eckert, C. Esposito, P. Ford, A. Gorsky, N. A. Griffiths, H-P. Grossart, D. P. Hamilton, M. A. Holgerson, B. J. Huser, T. Iwata, J. Jansen, S. Jones, S. Juutinen, P. Kortelainen, M. Koschorreck, T. Kragh, A. Laas, T. Larmola, S. Läubli, I. Laurion, M. F. Lehmann, L. Liu, P. J. Martikainen, A. Matoušů, S. A. McCord, J. J. Montes-Pérez, D. Nizzoli, C. Ordóñez, M. Peacock, R. M. Pilla, V. Preskienis, J. Pu, T. Riis, T. Saarela, A. B. Santoso, C. J. Schubert, A. Sepulveda-Jauregui, B. S. Sherman, J. S. Sø, K. J. Stenehjem, K. J. Stenehjem, K. E. D. Strock, K. Tsuchiya, K. Wendt-Potthoff, G. A. Weyhenmeyer, P. Znachor, and J. Zopfi. Carbon dioxide and methane depth-profile concentrations in 544 lakes, ponds, and reservoirs worldwide. In review at Scientific Data.

  7. Holmquist, J. R., A. R. Carr, and A. S. L. Lewis. Continuous Salinity Mapping for Coastal Wetlands in the United States. In revision at Remote Sensing of the Environment.

  8. Sjodin, A., G. Stokes, C. Gallagher, M. Javadian, A. S. L. Lewis, C. Schreiner, L. Super, B. Tuschhoff, A. Willson, M. C. Dietze, J. MacLachlan, J. Peters. Toward a standard lexicon for ecological forecasting. In revision at Frontiers in Ecology and the Environment.

2025

  1. Olsson, F. E., C. C. Carey, G. Harrison, R. Ladwig, M. F. Lapeyrolerie, A. S. L. Lewis, M. E. Lofton, F. Montealegre-Mora, J. S. Rabaey, C. J. Robbins, X. Yang, R. Q. Thomas. 2025. What can we learn from 100,000 freshwater forecasts? A synthesis from the NEON Ecological Forecasting Challenge. Ecological Applications, 35(1): e70004. https://doi.org/10.1002/eap.70004

  2. Wood, C. E., M. E. Schreiber, C. E. Bauer, A. Breef-Pilz, A. S. L. Lewis, N. W. Hammond, R. P. McClure, M. F. Verne, C. C. Carey. 2025. Preemptive activation of hypolimnetic oxygenation improves control of Fe and Mn in drinking water reservoirs. Water Research, 124722. https://doi.org/10.1016/j.watres.2025.124722

2024

  1. Lewis, A. S. L., M. P. Lau, S. F. Jane, K. C. Rose, Y. Be’eri-Shlevin, S. H. Burnet, F. Clayer, H. Feuchtmayr, H. P. Grossart, D. W. Howard, H. Mariash, J. Delgado Martin, R. L. North, I. Oleksy, R. M. Pilla, A. P. Smagula, R. Sommaruga, S. E. Steiner, P. Verburg, D. Wain, G. A. Weyhenmeyer, C. C. Carey. 2024. Anoxia Begets Anoxia: a positive feedback to the deoxygenation of temperate lakes. Global Change Biology, 30(1), e17046. http://doi.org/10.1111/gcb.17046
    • Reported in 36 news stories from 34 outlets (Altmetric)

  2. Lewis, A. S. L., A. Breef-Pilz, D. W. Howard, M. E. Lofton, F. Olsson, H. L. Wander, C. E. Wood, M. E. Schreiber, C. C. Carey. 2024. Reservoir Drawdown Highlights the Emergent Effects of Water Level Change on Reservoir Physics, Chemistry, and Biology. JGR Biogeosciences, 129, e2023JG007780. https://doi.org/10.1029/2023JG007780

  3. Mesman, J. P., C. C. Barbosa, A. S. L. Lewis, F. E. Olsson, S. Calhoun-Grosch, H.-P. Grossart, R. Ladwig, R. S. La Fuente, K. Münzner, L. G. T. Nkwalale, R. M. Pilla, K. Suresh and D. J. Wain. 2024. Challenges of Open Data in aquatic sciences: issues faced by data users and data providers. Frontiers in Environmental Science, 12:1497105. https://doi.org/10.3389/fenvs.2024.1497105

  4. Howard, D. W., J. A. Brentrup, D. C. Richardson, A. S. L. Lewis, F. E. Olsson, and C. C. Carey. Variability in ice cover does not affect annual metabolism estimates in a small eutrophic reservoir. JGR Biogeosciences, 129, e2024JG008057. https://doi.org/10.1029/2024JG008057

  5. Malmborg, C. A., A. M. Willson, L. M. Bradley, M. A. Beatty, D. H. Klinges, G. Koren, A. S. L. Lewis, K. Oshinubi, and W. M. Woelmer. Defining Model Complexity: An Ecological Perspective. Meteorological Applications, 31(3), e2202. https://doi.org/10.1002/met.2202

  6. Wander, H. L., A. S. L. Lewis, D. W. Howard, M. E. Lofton, W. M. Woelmer, B. L. Brown, and C. C. Carey. 2024. Zooplankton community structure and diel migration patterns vary over hours, days, and years in the pelagic and littoral zone of a eutrophic reservoir. Journal of Plankton Research, fbae017. https://doi.org/10.1093/plankt/fbae017

  7. Man, X., C. Lei, K. A. Bierlein, L. D. Bryant. A. S. L. Lewis, C. C. Carey, J. C. Little. 2024. Computationally characterizing the diffusive boundary layer in lakes and reservoirs. Journal of Soils and Sediments, 24, 2132–2143. https://doi.org/10.1007/s11368-024-03767-0

2023

  1. Lewis, A. S. L., C. R. Rollinson, A. J. Allyn, J. Ashander, S. Brodie, C. B. Brookson, E. Collins, M. C. Dietze, A. S. Gallinat, N. Juvigny-Khenafou, G. Koren, D. J. McGlinn, J. A. Peters, N. R. Record, C. J. Robbins, J. Tonkin, and G. M. Wardle. 2023. The power of forecasts to advance ecological theory. Methods in Ecology and Evolution, 14(3), 746–756. https://doi.org/10.1111/2041-210X.13955

  2. Lewis, A. S. L., M. E. Schreiber, B. R. Niederlehner, A. Das*, N. W. Hammond, M. E. Lofton, H. L. Wander, C. C. Carey. 2023. Effects of Hypoxia on Coupled Iron and Carbon Cycling Differ by Timescale in Two Freshwater Reservoirs. Journal of Geophysical Research: Biogeosciences, 128(1), e2022JG007071. https://doi.org/10.1029/2022JG007071

  3. Lewis, A. S. L., D. W. Howard, G. Koren, C. Kowalski, J. McLachlan, J. A. Peters, O. Tabares, G. Smies. 2023. Ethics in ecological forecasting: a case-based learning set. Teaching Issues and Experiments in Ecology, 19(13). https://doi.org/10.25334/5D99-Y019

  4. Lewis, A. S. L., G. O’Malley, G. K. Palissery, A. Hensley, C. López Lloreda, C. Perez, E. K. Bueren. 2023. Flipped Science Fair invites children to judge graduate student posters through a university-community partnership. Journal of STEM Outreach, 6(1), 1–12. https://doi.org/10.15695/jstem/v6i1.14

  5. Thomas, R.Q., C. Boettiger, C.C. Carey, M.C. Dietze, L.R. Johnson, M.A. Kenney, J.S. Mclachlan, J.A. Peters, E.R. Sokol, J.F. Weltzin, A. Willson, W.M. Woelmer, and Challenge Contributors. 2023. The NEON Ecological Forecasting Challenge. Frontiers in Ecology and the Environment, 21(3), 112–113. https://doi.org/10.1002/fee.2616

  6. Woelmer, W. M., A. G. Hounshell, M. E. Lofton, H. L. Wander, A. S. L. Lewis, D. Scott, C. C. Carey. 2023. The importance of time and space in biogeochemical heterogeneity and processing along the reservoir ecosystem continuum. Aquatic Sciences, 85(2), 66. https://doi.org/10.1007/s00027-023-00959-7

2022

  1. Lewis, A. S. L., W. M. Woelmer, H. L. Wander, D. W. Howard, J. W. Smith, R. P. McClure, M. E. Lofton, N. W. Hammond, R. S. Corrigan, R. Q. Thomas, C. C. Carey. 2022. Increased adoption of best practices in ecological forecasting enables comparisons of forecastability across systems. Ecological Applications, 32(2), e02500. https://doi.org/10.1002/eap.2500

  2. Jane, S., J. L. Mincer, M. P. Lau, A. S. L. Lewis, J. T. Stetler, K. C. Rose. 2022. Longer duration of seasonal stratification contributes to widespread increases in lake hypoxia and anoxia. Global Change Biology, 29(4), 1009–1023. https://doi.org/10.1111/gcb.16525

  3. Lofton, M. E., D. W. Howard, R. P. McClure, H. L. Wander, W. M. Woelmer, A. G. Hounshell, A. S. L. Lewis, C. C. Carey. 2022. Experimental thermocline deepening alters vertical distribution and community structure of phytoplankton in a four-year whole-reservoir manipulation. Freshwater Biology, 67(11), 1903–1924. https://doi.org/10.1111/fwb.13983

  4. Carey C. C., P. C. Hanson, R. Q. Thomas, A. B. Gerling, A. Hounshell, A. S. L. Lewis, M. E. Lofton, R. P. McClure, H. L. Wander, W. M. Woelmer, B. R. Niederlehner, M. E. Schreiber. 2022. Anoxia decreases the magnitude of the carbon, nitrogen, and phosphorus sink in freshwaters. Global Change Biology, 28(16), 4861–4881. https://doi.org/10.1111/gcb.16228

2021

  1. Carey, C. C., W. M. Woelmer, M. E. Lofton, R. J. Figueiredo, B. J. Bookout, R. S. Corrigan, V. Daneshmand, A. G. Hounshell, D. W. Howard, A. S. L. Lewis, R. P. McClure, H. L. Wander, N. K. Ward, R. Q. Thomas. 2021. Advancing lake and reservoir water quality management with near-term, iterative ecological forecasting. Inland Waters, 12(1), 107–120. https://doi.org/10.1080/20442041.2020.1816421

  2. Woelmer, W. M., L. M. Bradley, L. T. Haber, D. H. Klinges, A. S. L. Lewis, E. Mohr, C. L. Torrens, K. I. Wheeler, A. M. Willson. 2021. 10 Simple Rules for training yourself in an emerging field. PLOS Computational Biology, 17(10), e1009440. https://doi.org/10.1371/journal.pcbi.1009440

2020

  1. Lewis, A. S. L., B. S. Kim, H. L. Edwards, H. L. Wander, C. M. Garfield, H. E. Murphy, N. D. Poulin, S. D. Princiotta, K. C. Rose, A. E. Taylor, K. C. Weathers, C. R. Wigdahl-Perry, K. Yokota, D. C. Richardson, D. A. Bruesewitz. 2020. Prevalence of nitrogen and phosphorus colimitation of freshwater phytoplankton explained by nitrogen deposition and lake characteristics across northeastern United States. Inland waters, 10(1), 42–50. https://doi.org/10.1080/20442041.2019.1664233

2018

  1. Frassl, M. A, D. P. Hamilton, B. A. Denfeld, E. de Eyto, S. E. Hampton, P. S. Keller, S. Sharma, A. S. L. Lewis, G. A. Weyhenmeyer, C. M. O’Reilly, M. E. Lofton, N. Catalán. 2018. Ten simple rules for collaboratively writing a multi-authored paper. PLOS Computational Biology, 14(11), e1006508. https://doi.org/10.1371/journal.pcbi.1006508

2017

  1. Lewis, S. E., J. J. Piatt., A. S. L. Lewis. 2017. Impact of a diet of native or non-native leaves on an amphipod Gammarus pseudolimnaeus. Freshwater Science, 36(4), 739–749. https://doi.org/10.1086/694855